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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: caps-PC
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.92
Topology Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRRRAITMS LAPHLGQAFS LCLCLCLCLV LATLPVALGL ANCPNGCECD DDTLMVNCGE  60
   61 GTLDVLPIAL NPAIQRLVIK NNKLKTIDSS MQFYAQLTFL DLSFNDMLTI PERSFAYHAK 120
  121 LQELHLDHNK IGQVSNKTFL GLSTISVLNL RGNLIAELEY RTFSPMVKLA ELNLGQNRIS 180
  181 HIDPHALDGL DNLRVLYLDD NTLTTVPGEL TFQALHSLAE LYLGTNSFMT IPGGAFQDLK 240
  241 GLTRLDLRGA GLHNISGDAL KGLVSLRFLD LSDNRLPAIP TAAFQRLGRL EQLNIGQNDF 300
  301 EVISSGAFSG LRELRHLELT GAQRLRRVES GAFSGNTNLE HLNLSSNKQL NELSSIALGG 360
  361 LPHLSTVVLK ANQLSSLDEG LVPWADLQTL DLSENPFECD CRLLWLRHLL VSRNASGQYA 420
  421 PVICAYPTAL RDLPLAHLAE PLLGCAHGAA SKQAIIGILV VACAALITTL ALVLYTCRHR 480
  481 IREMLKGHSA LGRKEREYQK TFSDEEYMSR PPPGGGGLRG RGGGGGASTA SGAVQQLQVP 540
  541 SAVDQASNSF AQLSHIHYMT NNGQQQQAQQ QQSTSKMHHS QQDMRLLACN GGKPLNATSL 600
  601 PRHRPPVVQE STLSHYSQPL ANGIRLTQDH FNHNQNQSHN QHYGGVYAKP CDAMSEPGYI 660
  661 HNNSHYSLPL DHDLPPSPTP TPPPPALPLR NGVGMALIHG NTTGRRSFNN NNNVSTLSNN 720
  721 NHHGIGGGVG VAVGGTVGNN NGSLRRYH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle