YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG5946-PC
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEFDFVPLA VGVVAVLAGA LIVHYLLNKK STKPRREPNR TARLRTLVDP NDKYLLPLIE  60
   61 KENLSHDTRR FRFGLPSKQH VLGLPVGQHI HLIATIDNEL IIRPYTPISS DEDVGYVDLV 120
  121 VKVYFKDSHP KFPAGGKMTQ HLEQLELGDK ISFRGPSGRL QYLGNGTFSI KKLRKDPPKH 180
  181 VTAKRVNMIA GGTGITPMLQ LAREVLKRSD KDKTELALLF ANQSEKDILL RAELDELAQK 240
  241 HPDQFKIWYT VDKANEAWSY NTGHVNDDMM QQHLYPPGED TLCLLCGPPP MVNYTCIPGL 300
  301 ERLGHRAEQR FSY

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.81
Transmembrane Helix	6	27	0.91
Cytoplasmic	28	313	0.75