YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG5946-PD
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARIVESNFV PLAVGVVAVL AGALIVHYLL NKKSTKPRRE PNRTARLRTL VDPNDKYLLP  60
   61 LIEKENLSHD TRRFRFGLPS KQHVLGLPVG QHIHLIATID NELIIRPYTP ISSDEDVGYV 120
  121 DLVVKVYFKD SHPKFPAGGK MTQHLEQLEL GDKISFRGPS GRLQYLGNGT FSIKKLRKDP 180
  181 PKHVTAKRVN MIAGGTGITP MLQLAREVLK RSDKDKTELA LLFANQSEKD ILLRAELDEL 240
  241 AQKHPDQFKI WYTVDKANEA WSYNTGHVND DMMQQHLYPP GEDTLCLLCG PPPMVNYTCI 300
  301 PGLERLGHRA EQRFSY

Type	Start	End	Confidence
Cytoplasmic	1	8	0.61
Transmembrane Helix	9	30	0.90
Non-Cytoplasmic	31	316	0.73