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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Dscam-PR
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.95
Topology Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMPNERLKW LMLFAAVALI ACGSQTLAAN PPDADQKGPV FLKEPTNRID FSNSTGAEIE  60
   61 CKASGNPMPE IIWIRSDGTA VGDVPGLRQI SSDGKLVFPP FRAEDYRQEV HAQVYACLAR 120
  121 NQFGSIISRD VHVRAVVAQY YDTDVNKAYV IRGNAAVLKC EIPSFVADFV SVVSWHTDQN 180
  181 EDFLPGSEYD GKYLVLPSGE LHIREVGPED GYKSYQCRTK HRLTGETRLS ATKGRLVITE 240
  241 PVGSIGPRLT SGDESRILRV YLAASATLLC PAQAYPVPFF RWYKFIEGTT RKQAVVLNDR 300
  301 VKQVSGTLII KDAVVEDSGK YLCVVNNSVG GESVETVLTV TAPLSAKIDP PTQTVDFGRP 360
  361 AVFTCQYTGN PIKTVSWMKD GKAIGHSEPV LRIESVKKED KGMYQCFVRN DQESAEASAE 420
  421 LKLGGRFDPP VIRQAFQEET MEPGPSVFLK CVAGGNPTPE ISWELDGKKI ANNDRYQVGQ 480
  481 YVTVNGDVVS YLNITSVHAN DGGLYKCIAK SKVGVAEHSA KLNVYGLPYI RQMEKKAIVA 540
  541 GETLIVTCPV AGYPIDSIVW ERDNRALPIN RKQKVFPNGT LIIENVERNS DQATYTCVAK 600
  601 NQEGYSARGS LEVQVMELPQ VDQFHFNANG VNGGQAVRVM CMVSSGDLPI DIYWLKDGQP 660
  661 LLRSIYHKID EYTLILSLRQ TTIGDSGNYT CVASNAAGVA SRWSILKVKV PPRWILEPTD 720
  721 KAFAQGSDAK VECKADGFPK PQVTWKKAVG DTPGEYKDLK KSDNIRVEEG TLHVDNIQKT 780
  781 NEGYYLCEAI NGIGSGLSAV IMISVQAPPE FTEKLRNQTA RRGEPAVLQC EAKGEKPIGI 840
  841 LWNMNNMRLD PKNDNRYTIR EEILSTGVMS SLSIKRTERS DSALFTCVAT NAFGSDDASI 900
  901 NMIVQEVPEM PYALKVLDKS GRSVQLSWAQ PYDGNSPLDR YIIEFKRSRA SWSEIDRVIV 960
  961 PGHTTEAQVQ KLSPATTYNI RIVAENAIGT SQSSEAVTII TAEEAPSGKP QNIKVEPVNQ1020
 1021 TTMRVTWKPP PRTEWNGEIL GYYVGYKLSN TNSSYVFETI NFITEEGKEH NLELQNLRVY1080
 1081 TQYSVVIQAF NKIGAGPLSE EEKQFTAEGT PSQPPSDTAC TTLTSQTIRV GWVSPPLESA1140
 1141 NGVIKTYKVV YAPSDEWYDE TKRHYKKTAS SDTVLHGLKK YTNYTMQVLA TTAGGDGVRS1200
 1201 VPIHCQTEPD VPEAPTDVKA LVMGNAAILV SWRPPAQPNG IITQYTVYSK AEGAETETKT1260
 1261 QKVPHYQMSF EATELEKNKP YEFWVTASTT IGEGQQSKSI VAMPSDQVPA KIASFDDTFT1320
 1321 ATFKEDAKMP CLAVGAPQPE ITWKIKGVEF SANDRMRVLP DGSLLIKSVN RQDAGDYSCH1380
 1381 AENSIAKDSI THKLIVLAPP QSPHVTLSAT TTDALTVKLK PHEGDTAPLH GYTLHYKPEF1440
 1441 GEWETSEVSV DSQKHNIEGL LCGSRYQVYA TGFNNIGAGE ASDILNTRTK GQKPKLPEKP1500
 1501 RFIEVSSNSV SLHFKAWKDG GCPMSHFVVE SKKRDQIEWN QISNNVKPDN NYVVLDLEPA1560
 1561 TWYNLRITAH NSAGFTVAEY DFATLTVTGG TIAPSRDLPE LSAEDTIRII LSNLNLVVPV1620
 1621 VAALLVIIIA IIVICILRSK GNHHKDDVVY NQTMGPGATL DKRRPDLRDE LGYIAPPNRK1680
 1681 LPPVPGSNYN TCDRIKRGRG GLRSNHSTWD PRRNPNLYEE LKAPPVPMHG NHYGHAHGNA1740
 1741 ECHYRHPGME DEICPYATFH LLGFREEMDP TKAMNFQTFP HQNGHAGPVP GHAGTMLPPG1800
 1801 HPGHVHSRSG SQSMPRANRY QRKNSQGGQS SIYTPAPEYD DPANCAEEDQ YRRYTRVNSQ1860
 1861 GGSLYSGPGP EYDDPANCAP EEDQYGSQYG GPYGQPYDHY GSRGSMGRRS IGSARNPGNG1920
 1921 SPEPPPPPPR NHDMSNSSFN DSKESNEISE AECDRDHGPR GNYGAVKRSP QPKDQRTTEE1980
 1981 MRKLIERNET GPKQLQLQQA NGAGFTAYDT MAV

YRC Informatics Platform - Version 3.0
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