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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|113194579, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.91
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFTRLKTLS LLVCALLALS FPGHVSGAGN NNNKKGSQPV APPEPEAVIE EVNAKQLEKL  60
   61 LADKDYVAVF WYARSCVTCD KVLAELEKID DDTDSFGVDF VKINDKRLAK QYGIKNFPAL 120
  121 TYFREKEPII YDGDLMDEEG VLDFLTSLEA MDLPDRIEEV NAKILQKIIE DTDFVAVLFC 180
  181 NIASNQDVFN WILEQKADQS IQLINRDQLF EYIGTKDFLA VVFYKEDDPD SPRVLRHIEL 240
  241 IDDEAAEYGI YIVKMHDKLM AKKYGFRNPP GLTYFRKGKY INYDGDIDDE EEVLDWLTSP 300
  301 ANMEMTDHIE QVNRKMFEKI RKNSDYVAVI FYSDECKQCP RVLAEVEHID DEADKAGIDF 360
  361 VKIDDKQMAK EYGVFALPAI VFFKPTSKEP VIYAGDLYEE EQILTWLITQ KDPSGDVIED 420
  421 LEGERLVHLI EESGSIAVYF YADGCEQCTK VLEELENIDD DCDKHGITFV KTRDFSVADG 480
  481 YGVHEYPALV YFEGGIPNVF EGELSEEEEV LQWLITQKTE DRIELITRQM LETMVEETQY 540
  541 LAVYFYKINC NICDQILEGL ELIDDECDVF GIHMVKIQDP QLAKRYSIKT FPALVYFRNG 600
  601 NPLLFEGDLQ NEQSVLEWLI DDDNRELADE IEEVNERMLD RLMAESTLLV VFFYDDDCAE 660
  661 CEEILEELEE IDGEADMFGI DFVKIASIQA AKKYEIVNIP SLVYFRKQVP VLYDGDLHQH 720
  721 DKVITWLTSQ DVFEIKNEIE EVNRKMLDKL LEENEFLAVF FYEHNQPDST AALEKLENID 780
  781 SETDNLDITF VKMADSRYAK KWGVTKLPAM VYFRRRFPSI YRGDLLSEDE VLEWLRKNRF 840
  841 RQPELNIFMY ALIALAVAFV VYTAFLLQCF KPAPPPPVQH PKQS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle