YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	d4-PB
Protein type:	Transmembrane
Type Confidence:	0.57
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGASGDNDSK DSHANVEKEW FHDEMDTSHF HHGDEFEDDF DSDNDFDESY TSRGKRKKCS  60
   61 RPRRTNANVE GTPKRGRKGG GNRRKNAVEG ESDRKRRAGG NSANTSAAAA AAAAAVAHAA 120
  121 CTAAAVASTG LYASHSNSAS PIPINDDNSQ SGLILPTNIS SSYDKTSSDA GASNDSIPLA 180
  181 TMVAINAGLT TSNVCNAHPV QTGTNQTVFA TGNKVKQRVE RDIAQPSPYC DFCLGDQREN 240
  241 KKTNMPEELV SCSDCGRSGH PSCLQFTANM IISVKRYRWQ CIECKYCSIC GTSDNDDQLL 300
  301 FCDDCDRGYH MYCLSPPLVT PPEGSWSCKL CMEEFHKIK

Type	Start	End	Confidence
Cytoplasmic	1	104	0.55
Transmembrane Helix	105	127	0.50
Non-Cytoplasmic	128	339	0.96