YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|112774558
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.81
Transmembrane Helix	17	38	0.93
Non-Cytoplasmic	39	45	0.68
Transmembrane Helix	46	76	0.71
Cytoplasmic	77	84	0.69
Transmembrane Helix	85	106	0.90
Non-Cytoplasmic	107	113	0.64
Transmembrane Helix	114	134	0.92
Cytoplasmic	135	142	0.65
Transmembrane Helix	143	162	0.91
Non-Cytoplasmic	163	169	0.59
Transmembrane Helix	170	188	0.94
Cytoplasmic	189	217	0.74
Transmembrane Helix	218	240	0.73
Non-Cytoplasmic	241	259	0.83
Transmembrane Helix	260	282	0.84
Cytoplasmic	283	291	0.73
Transmembrane Helix	292	309	0.96
Non-Cytoplasmic	310	316	0.62
Transmembrane Helix	317	337	0.93
Cytoplasmic	338	348	0.79
Transmembrane Helix	349	365	0.56
Non-Cytoplasmic	366	366	0.28
Transmembrane Helix	367	384	0.50
Cytoplasmic	385	492	0.53

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKSLRQDWL SNVRNDLLAG IVVALALIPE AIAFSIIAGV DPKVGLYASF SIAAIIAFAG  60
   61 GRPGMVSGAT GAMALLMVTL VKDHGLQYLL AATVLTGVLQ ILAGWLKLGA LMRFVSRSVI 120
  121 TGFVNALAIL IFMAQLPELT NVTWHVYAMT AAGLGIIYGF PYITKAVPSP LVAIVVLTAV 180
  181 AIFLGLDIRT VGDMGKLPDS LPVFLLPDVP LNLETLKIIF PVSATLAVVG LLESMMTASI 240
  241 VDDLTDSNSN KNRECVGQGV ANIASGFLGG MAGCAMIGQS VINVKSGGRG RLSTLAAGVF 300
  301 LLLMVVFIGD WVARIPMAAL VAVMIMVSIG TFNWASIRNL REHPKSSSVV MLATVVVTVG 360
  361 THDLAKGVLV GVLLSGFFFA HKVGQILRVT SRTEDEGRVR TYTITGQVFF ASSERFINAF 420
  421 DYKEVIEKVR IDVSRAHFWD ITAVSALDKV VIKFRREATE VEVIGLNEAS ATLVDKFAVH 480
  481 DKDGADDMLM GH