YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	QDR2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	61	0.98
Transmembrane Helix	62	82	0.95
Non-Cytoplasmic	83	100	0.84
Transmembrane Helix	101	121	0.90
Cytoplasmic	122	128	0.85
Transmembrane Helix	129	151	0.90
Non-Cytoplasmic	152	157	0.63
Transmembrane Helix	158	178	0.88
Cytoplasmic	179	186	0.85
Transmembrane Helix	187	209	0.93
Non-Cytoplasmic	210	216	0.85
Transmembrane Helix	217	237	0.96
Cytoplasmic	238	297	0.98
Transmembrane Helix	298	319	0.86
Non-Cytoplasmic	320	338	0.82
Transmembrane Helix	339	359	0.94
Cytoplasmic	360	413	0.96
Transmembrane Helix	414	432	0.95
Non-Cytoplasmic	433	437	0.72
Transmembrane Helix	438	464	0.81
Cytoplasmic	465	474	0.79
Transmembrane Helix	475	494	0.90
Non-Cytoplasmic	495	503	0.74
Transmembrane Helix	504	524	0.96
Cytoplasmic	525	542	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGATSSIIR ENDFEDELAE SMQSYNRETA DKLALTRTES VKPEPEITAP PHSRFSRSFK  60
   61 TVLIAQCAFT GFFSTIAGAI YYPVLSVIER KFDIDEELVN VTVVVYFVFQ GLAPTFMGGF 120
  121 ADSLGRRPVV LVAIVIYFGA CIGLACAQTY AQIIVLRCLQ AAGISPVIAI NSGIMGDVTT 180
  181 RAERGGYVGY VAGFQVLGSA FGALIGAGLS SRWGWRAIFW FLAIGSGICF LASFLILPET 240
  241 KRNISGNGSV TPKSYLNRAP ILVLPTVRKS LHLDNPDYET LELPTQLNLL APFKILKAYE 300
  301 ICILMLVAGL QFAMYTTHLT ALSTALSKQY HLTVAKVGLC YLPSGICTLC SIVIAGRYLN 360
  361 WNYRRRLKYY QNWLGKKRSK LLEEHDNDLN LVQRIIENDP KYTFNIFKAR LQPAFVTLLL 420
  421 SSSGFCAYGW CITVKAPLAA VLCMSGFASL FSNCILTFST TLIVDLFPTK TSTATGCLNL 480
  481 FRCILSAVFI AALSKMVEKM KFGGVFTFLG ALTSSSSILL FILLRKGKEL AFKRKKQELG 540
  541 VN