YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111027053, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSVRYGFAI DQRTCIGCHA CTVACKTEHE VPVGQFRTWV KYVDTGEFPD TTRSFGVMRC  60
   61 NHCTDAPCVK ICPTQALFKR DDGIVDFDNE RCIGCKSCMQ ACPYDALYID DTTHTAAKCN 120
  121 LCAHRIDNDM EPACVVVCPT HSIWVGDLDD PTSGIAGLIS THETAVRSPE QNTGPNVFYL 180
  181 GADRAVLDPL AAPVADTYLW AKPDAHRLAT AGDLPGDRTT RARTTLNTAH PRPWGWRVTT 240
  241 YLWTKAVAAG ALAIAGLAHL LGVDLGWLGD YGAPAVALLG ATATGALLIW DLKRPERFLY 300
  301 IFLKSNWTSW LVWGAYALAA FAGGAVLWIL AALLGIGWAQ TVLAWLAIPF GALVAGYTGF 360
  361 LFGQAEGRDL WQSPLLFWHL LVQAAMVGAG ALLVMAPFAD LASGAIAFLT RAFVLSTGLH 420
  421 LMMLGIEYSS RHASRQASVA AHIITHGRYA RLFWLGAIAP AVLAAALAAP AWTGSGSAVL 480
  481 LVLAGLLAQV ALLDYETAYV RAGQDPPLS

Type	Start	End	Confidence
Cytoplasmic	1	240	0.99
Transmembrane Helix	241	263	0.92
Non-Cytoplasmic	264	270	0.88
Transmembrane Helix	271	290	0.96
Cytoplasmic	291	309	0.91
Transmembrane Helix	310	332	0.94
Non-Cytoplasmic	333	341	0.73
Transmembrane Helix	342	363	0.93
Cytoplasmic	364	374	0.93
Transmembrane Helix	375	398	0.90
Non-Cytoplasmic	399	406	0.73
Transmembrane Helix	407	426	0.94
Cytoplasmic	427	449	0.88
Transmembrane Helix	450	469	0.93
Non-Cytoplasmic	470	475	0.64
Transmembrane Helix	476	495	0.80
Cytoplasmic	496	509	0.79