YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YIL067C
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVHFDDNAN TTWEATDPGV SSDCDGQHRV TESIQLQNFS NTDMESMLDE EGRENSKSKW  60
   61 LLLKRKHPIQ KFIERVWNGP VEPSDEPPSF PKRWGWLKKI DDFPQTTFKT KIPSKLIRLL 120
  121 LLIVYCCFWM RIFYSLIYPY LIKPPYFHPN DGSEKIPILS LSCNSYLNWE GTNNECGLNA 180
  181 KNCGPLDNKE YMIRCPALCD RGGWTYSAIA VGNRRVKYTG YEIGGGALFS EEDPMVVSYP 240
  241 YRSDSFPCAS AVHAGVISPF YGGCTKVSMQ GAQNSFPSKK GMYNTGFSVA FNSFFPGSYS 300
  301 FRDIQGGILS GCYDPRAAVV ALNMLFGLPI FYLYDSIYGY WINTIVGYWT LVLSLDPPLL 360
  361 TDAHDPASVY ELFSVGFQRL LPLCFVLYVV WKSAVKRTLE NGSPIAKVIL WYPTFWLGIS 420
  421 NNVTFDRLPV DRLTTTDLKE QAGALTAVGS IAATILTCAV IQAYSLWKSG RFKKYFKIYI 480
  481 CFIGGLIALG SLPGLNLRIH HYILGSILVP GCATRGSSAY LFQGILVGLI LSGVARWDFA 540
  541 SIVETDTALL RGEAGASLKP PILDFNDDQN HSLSWHLNAT DPVIDQIGNI DGFSLLLNDV 600
  601 EVYVGKNETV SIDVLRMENP ALAQMMDDAL DASNGTIDLY LRVARASVRS PTNRGDYTNA 660
  661 GVLQWPNGMW QKPEPGVS

Type	Start	End	Confidence
Cytoplasmic	1	118	0.89
Transmembrane Helix	119	138	0.85
Non-Cytoplasmic	139	280	0.75
Transmembrane Helix	281	301	0.52
Cytoplasmic	302	316	0.45
Transmembrane Helix	317	342	0.66
Non-Cytoplasmic	343	374	0.63
Transmembrane Helix	375	391	0.86
Cytoplasmic	392	407	0.66
Transmembrane Helix	408	425	0.78
Non-Cytoplasmic	426	442	0.89
Transmembrane Helix	443	466	0.89
Cytoplasmic	467	474	0.93
Transmembrane Helix	475	497	0.89
Non-Cytoplasmic	498	518	0.73
Transmembrane Helix	519	537	0.81
Cytoplasmic	538	678	0.91