YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|112821683
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCFSGLIPII NLFYFSIGIK VAFESIALGI FLFSQMTVGM FGNSLILFYY VILKLTGKHL  60
   61 MPKDLIIEHL TFANCLCIIS KGIPQTLSDY GLKDFLDDFG CKLILYVYRI TRGVSFYAMC 120
  121 LLSCFQAITI SPSNSRWMMF KYRATKYFGS SCSISWLVHL FLNILTPARV SGPSYNKNIT 180
  181 KRMIYGSCSW FSLSNFATAL YLFLLCFSDG LCLGLMAGSS VSMVSILYRH KKRVKHIHSA 240
  241 QHFLKVSPEE RATQTILILV CTFVLSYSFS SIVAIFTTYS KYPLLWSISV FTLIEICFPI 300
  301 CCPFVLISNM KSRASVFLPC FCKR

Type	Start	End	Confidence
Cytoplasmic	1	8	0.70
Transmembrane Helix	9	31	0.73
Non-Cytoplasmic	32	32	0.37
Transmembrane Helix	33	53	0.83
Cytoplasmic	54	112	0.70
Transmembrane Helix	113	130	0.89
Non-Cytoplasmic	131	143	0.57
Transmembrane Helix	144	166	0.80
Cytoplasmic	167	182	0.59
Transmembrane Helix	183	205	0.70
Non-Cytoplasmic	206	209	0.57
Transmembrane Helix	210	228	0.90
Cytoplasmic	229	254	0.92
Transmembrane Helix	255	276	0.94
Non-Cytoplasmic	277	284	0.78
Transmembrane Helix	285	307	0.93
Cytoplasmic	308	324	0.96