YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CBR1
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYKYSYYIRR KNEREKKVLK VCIQLALQQE TQSIKQSKMA IDAQKLVVVI VIVVVPLLFK  60
   61 FIIGPKTKPV LDPKRNDFQS FPLVEKTILT HNTSMYKFGL PHADDVLGLP IGQHIVIKAN 120
  121 INGKDITRSY TPTSLDGDTK GNFELLVKSY PTGNVSKMIG ELKIGDSIQI KGPRGNYHYE 180
  181 RNCRSHLGMI AGGTGIAPMY QIMKAIAMDP HDTTKVSLVF GNVHEEDILL KKELEALVAM 240
  241 KPSQFKIVYY LDSPDREDWT GGVGYITKDV IKEHLPAATM DNVQILICGP PAMVASVRRS 300
  301 TVDLGFRRSK PLSKMEDQVF VF

Type	Start	End	Confidence
Cytoplasmic	1	42	0.68
Transmembrane Helix	43	63	0.65
Non-Cytoplasmic	64	322	0.95