YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TED1
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRCAVKKFA YFATFLTIVA NIYIYTYPSF HPEQCSWNCS NKNAPLQKDL TFVDKVKNYF  60
   61 SDVREQWHGS HASAGNDEDI HILAFGDPQI KGIWPKTPYV SRLDTYGNDY YLGHIYDMMQ 120
  121 QRLKPQVVTV MGDLFSSQWI GDSEFHNRTK RYISRIFKRD PTSIENIKQQ NLDEKGQYKA 180
  181 NWPEWGDRFN EILDNVKENE ADNQELSFGF GYENIHSWNP DLEDFLIINI TGNHDVGYSG 240
  241 DATYQHMTRF HDLFGKDNYW IEYETNTTHP WRIVVLNDLL LEGPALQPEF VEATWIFLNQ 300
  301 LNERKFNGST VLLTHVPFYK REGLCVDGPD TRYYPDAHAP ESYKSGLLRS QNHLSESVSN 360
  361 QVLNMIFENG KPGIILTGHD HEGCETVYNK KSTSTWEATK NIESDVFVKE ITVKSMMGEF 420
  421 NGNTGLVTGH FNTDSMTWEW TFSLCPFAIQ HVWWFAKVSL LVTIFTWSSL LFV

Type	Start	End	Confidence
Cytoplasmic	1	8	0.86
Transmembrane Helix	9	27	0.87
Non-Cytoplasmic	28	451	0.98
Transmembrane Helix	452	471	0.68
Cytoplasmic	472	473	0.60