YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SSM4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	129	0.99
Transmembrane Helix	130	150	0.94
Non-Cytoplasmic	151	200	0.94
Transmembrane Helix	201	220	0.91
Cytoplasmic	221	471	0.98
Transmembrane Helix	472	493	0.89
Non-Cytoplasmic	494	500	0.62
Transmembrane Helix	501	522	0.55
Cytoplasmic	523	616	0.50
Transmembrane Helix	617	650	0.68
Non-Cytoplasmic	651	665	0.50
Transmembrane Helix	666	689	0.83
Cytoplasmic	690	734	0.56
Transmembrane Helix	735	757	0.87
Non-Cytoplasmic	758	777	0.50
Transmembrane Helix	778	792	0.51
Cytoplasmic	793	964	0.92
Transmembrane Helix	965	985	0.84
Non-Cytoplasmic	986	988	0.50
Transmembrane Helix	989	1008	0.68
Cytoplasmic	1009	1108	0.77
Transmembrane Helix	1109	1134	0.76
Non-Cytoplasmic	1135	1169	0.79
Transmembrane Helix	1170	1189	0.90
Cytoplasmic	1190	1213	0.82
Transmembrane Helix	1214	1234	0.90
Non-Cytoplasmic	1235	1268	0.87
Transmembrane Helix	1269	1291	0.89
Cytoplasmic	1292	1319	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVDSDVNVS RLRDELHKVA NEETDTATFN DDAPSGATCR ICRGEATEDN PLFHPCKCRG  60
   61 SIKYMHESCL LEWVASKNID ISKPGADVKC DICHYPIQFK TIYAENMPEK IPFSLLLSKS 120
  121 ILTFFEKARL ALTIGLAAVL YIIGVPLVWN MFGKLYTMML DGSSPYPGDF LKSLIYGYDQ 180
  181 SATPELTTRA IFYQLLQNHS FTSLQFIMIV ILHIALYFQY DMIVREDVFS KMVFHKIGPR 240
  241 LSPKDLKSRL KERFPMMDDR MVEYLAREMR AHDENRQEQG HDRLNMPAAA ADNNNNVINP 300
  301 RNDNVPPQDP NDHRNFENLR HVDELDHDEA TEEHENNDSD NSLPSGDDSS RILPGSSSDN 360
  361 EEDEEAEGQQ QQQQPEEEAD YRDHIEPNPI DMWANRRAQN EFDDLIAAQQ NAINRPNAPV 420
  421 FIPPPAQNRA GNVDQDEQDF GAAVGVPPAQ ANPDDQGQGP LVINLKLKLL NVIAYFIIAV 480
  481 VFTAIYLAIS YLFPTFIGFG LLKIYFGIFK VILRGLCHLY YLSGAHIAYN GLTKLVPKVD 540
  541 VAMSWISDHL IHDIIYLYNG YTENTMKHSI FIRALPALTT YLTSVSIVCA SSNLVSRGYG 600
  601 RENGMSNPTR RLIFQILFAL KCTFKVFTLF FIELAGFPIL AGVMLDFSLF CPILASNSRM 660
  661 LWVPSICAIW PPFSLFVYWT IGTLYMYWFA KYIGMIRKNI IRPGVLFFIR SPEDPNIKIL 720
  721 HDSLIHPMSI QLSRLCLSMF IYAIFIVLGF GFHTRIFFPF MLKSNLLSVP EAYKPTSIIS 780
  781 WKFNTILLTL YFTKRILESS SYVKPLLERY WKTIFKLCSR KLRLSSFILG KDTPTERGHI 840
  841 VYRNLFYKYI AAKNAEWSNQ ELFTKPKTLE QAEELFGQVR DVHAYFVPDG VLMRVPSSDI 900
  901 VSRNYVQTMF VPVTKDDKLL KPLDLERIKE RNKRAAGEFG YLDEQNTEYD QYYIVYVPPD 960
  961 FRLRYMTLLG LVWLFASILM LGVTFISQAL INFVCSFGFL PVVKLLLGER NKVYVAWKEL1020
 1021 SDISYSYLNI YYVCVGSVCL SKIAKDILHF TEGQNTLDEH AVDENEVEEV EHDIPERDIN1080
 1081 NAPVNNINNV EEGQGIFMAI FNSIFDSMLV KYNLMVFIAI MIAVIRTMVS WVVLTDGILA1140
 1141 CYNYLTIRVF GNSSYTIGNS KWFKYDESLL FVVWIISSMV NFGTGYKSLK LFFRNRNTSK1200
 1201 LNFLKTMALE LFKQGFLHMV IYVLPIIILS LVFLRDVSTK QIIDISHGSR SFTLSLNESF1260
 1261 PTWTRMQDIY FGLLIALESF TFFFQATVLF IQWFKSTVQN VKDEVYTKGR ALENLPDES