YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TIR3
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.77
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFTKIAALL AVAAASTQLV SAEVGQYEIV EFDAILADVK ANLEQYMSLA MNNPDFTLPS  60
   61 GVLDVYQHMT TATDDSYTSY FTEMDFAQIT TAMVQVPWYS SRLEPEIIAA LQSAGISITS 120
  121 LGQTVSESGS ESATASSDAS SASESSSAAS SSASESSSAA SSSASESSSA ASSSASESSS 180
  181 AASSSASEAA KSSSSAKSSG SSAASSAASS ASSKASSAAS SSAKASSSAE KSTNSSSSAT 240
  241 SKNAGAAMDM GFFSAGVGAA IAGAAAMLL

Type	Start	End	Confidence
Signal Peptide	1	22	0.99
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	244	0.99
Transmembrane Helix	245	268	0.70
Cytoplasmic	269	269	0.75