YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66220164
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	87	0.95
Transmembrane Helix	88	109	0.94
Non-Cytoplasmic	110	142	0.81
Transmembrane Helix	143	164	0.89
Cytoplasmic	165	181	0.79
Transmembrane Helix	182	203	0.80
Non-Cytoplasmic	204	209	0.75
Transmembrane Helix	210	230	0.78
Cytoplasmic	231	248	0.90
Transmembrane Helix	249	272	0.77
Non-Cytoplasmic	273	282	0.71
Transmembrane Helix	283	303	0.74
Cytoplasmic	304	310	0.56
Transmembrane Helix	311	325	0.46
Non-Cytoplasmic	326	335	0.59
Transmembrane Helix	336	357	0.90
Cytoplasmic	358	375	0.77
Transmembrane Helix	376	395	0.71
Non-Cytoplasmic	396	459	0.60
Transmembrane Helix	460	480	0.84
Cytoplasmic	481	482	0.37
Transmembrane Helix	483	504	0.58
Non-Cytoplasmic	505	511	0.56
Transmembrane Helix	512	531	0.84
Cytoplasmic	532	539	0.49
Transmembrane Helix	540	561	0.76
Non-Cytoplasmic	562	783	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEESSLLKE STSINDTNMV EEVEERDPES NPLNEPLLKR NRTLSSNPLA LVGAKVSYIE  60
   61 SLDYEINEND LFKQDWRSRS RTQVLQYIFW KWTLAFLVGL LTGVIATLIN LAVENIAGYK 120
  121 FLAVVNFIQK ERYLRGFLYF TGINFLLTFV ASILCVCFAP TAAGPGIPEI KAYLNGVDTP 180
  181 NMYGATTLFV KIIGSIGAVS AGLDLGKEGP LVHIGSCIAS LLGQGGPDNY RIKWRWLRYF 240
  241 NNDRDRRDLI TCGASSGVCA AFRAPVGGVL FALEEVATWW RSALLWRTFF STAVVVVVLR 300
  301 ASIELCHKGK CGLFGEGGLI MYDVSDVTVR YNVMDIIPVV IIGVLGGVLG SLYNYLLHKV 360
  361 LRVYNLINQK GKMYKLLLSL SVAIFTSACQ YGLPFLAKCT PCDPSLSDVC PTNGRSGNFK 420
  421 QFNCPKGYYN DLATLLLTTN DDAVRNIFST NTPLEYQPSS IIIFFALYCI LGLITFGIAV 480
  481 PSGLFLPIIL MGSGYGRLLG ILMGPHTNID QGLFAVLGAA SLMAGSMRMT VSLCVIFLEL 540
  541 TNNLLLLPIT MIVLLIAKTV GDSFNPSIYE IILHLKGLPF MDANPEPWMR NLTVGELVDV 600
  601 KPAVVSFKGV EKVANIVNAL KNTTHNGFPV MDCGLVPTTG VANEATELHG IILRAHLIQV 660
  661 RKKKWFLKER RRTEEWEVRE KFTWVELAER EGNIEDVAVT KEEMEMFVDL HPLTNTTPFT 720
  721 VLESMSVAKA MVLFRQVGLR HMLVVPKYQA SGVSPVIGIL TRQDLLAYNI LTVFPHLAKS 780
  781 KRK