YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190405967
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSALGKWVR GSRNDKDFVT KYTADLSQIT SQIHQLDVAL KKSQSILSQW QSNLTFYGIA  60
   61 LTVLALSYTY WEYHGYRPYL VVTALLCIGS LILFKWALTK LYAFYNNNRL RKLAKLRAIH 120
  121 QKKLEKLKEE THYNATSSII QRFSSGEDQN DDAMVLLDDE LNAKYQELNN LKTELEKFKK 180
  181 ESHVKGLKKE DSDAWFDKII SVLAGGNELD STSSLSPFKK IICPQCHWKS NCYRLASKPI 240
  241 IFICPHCNHK IDEVKEREDA IEAKQPAQPS QSEKEKTK

Type	Start	End	Confidence
Cytoplasmic	1	49	0.97
Transmembrane Helix	50	71	0.88
Non-Cytoplasmic	72	78	0.79
Transmembrane Helix	79	99	0.93
Cytoplasmic	100	278	0.97