YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|112363384
Protein type:	Transmembrane
Type Confidence:	0.61
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRAEFGTRGE RKPSSINGGG GGGGVLLPIT TPSPSSFPSS TTSDVTLTST TTTAATTAAT  60
   61 AATTTTAVEN LRCPRCDSSN TKFCYYNNYN LTQPRHFCKT CRRYWTKGGA LRNVPIGGGC 120
  121 RKNKSIGVAS SVAGKTASTK MKTIASEFGK SPGFGGGFEV EHELPPPPGQ ILWGSPQNTH 180
  181 LLALLRATQT QNMSLKEEGT LLGHMVSTDQ PLVSNTLLSY RTLGYDAVAQ VPSSLGLFGR 240
  241 NNQDQQQQNG GFLVGEHHNN SGIQELYQKL RSSSTVNNNY CSDNNSSQMF MGNMASNYSS 300
  301 SV

Type	Start	End	Confidence
Cytoplasmic	1	13	0.58
Transmembrane Helix	14	31	0.57
Non-Cytoplasmic	32	302	0.98