YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SVP26
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLELISYAG TVSGFLFLTL SIASGLYYIS ELVEEHTEPT RRFLTRAIYG IILILILLLL  60
   61 LDGFPFKLTL FSIACYIVYY QNLKSFPFIS LTSPTFLLSC VCVVLNHYFW FKYFNDTEVP 120
  121 PQFKFDPNYI PRRRASFAEV ASFFGICVWF IPFALFVSLS AGDYVLPTTS EQHMAKKNDD 180
  181 ITTNNQPKFR KRAVGLARVV INSVRKYIYS LARVFGYEIE PDFDRLAV

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.78
Transmembrane Helix	8	29	0.93
Cytoplasmic	30	42	0.86
Transmembrane Helix	43	66	0.83
Non-Cytoplasmic	67	87	0.76
Transmembrane Helix	88	110	0.88
Cytoplasmic	111	139	0.83
Transmembrane Helix	140	162	0.87
Non-Cytoplasmic	163	228	0.88