YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MTC6
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.78
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWILIYLFII WSSLRTWVTA VDSTTTVGDD LNETVSASVW PTMSPQMTVA FRSQRDVMGN  60
   61 LTIDQLPYVG LNLRRVLLNN ETSMVNEGNN TRLLTLFKSM LSSEANAFVL DLEQYNNDLR 120
  121 VVDTTLLFSD VLTALQSFIF STQNNLYANI IVLLLNISAP ELDSTEYRHQ NQTLNTTYIL 180
  181 DKNLGNSFIY KPTDLQSDRA KNNTWNIYGK SSIDGWPTLG SVLYEQKKRL VIGELTDFFN 240
  241 ETTAPYIFPH DVFHYEQGNS TLDCPSTVEG LTDLSSIHWR FLDSLFNSVD IKEYISCGLS 300
  301 PIISNSAYVN NVTQLADIIH EGSVWSWDSD QPSVTQSTSK SGSSSGTLEA YNCVLLYYFA 360
  361 NNETVTWRVG NCYNSNIGLC RYENMAFRWL VRSNKATYFD FDSYQGSKCP DQYSFNIPRS 420
  421 PLEQRSFIAY MRNSSFSDTQ IWIDLNSISV SNCWVSGGPY ASCPYEKVIS RRNFVTMMVP 480
  481 ASVCSFALLC IVVYLSVLRV PIYDNRKNWR RVINKISKSE LEGVPS

Type	Start	End	Confidence
Signal Peptide	1	20	0.80
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	476	0.98
Transmembrane Helix	477	498	0.91
Cytoplasmic	499	526	0.84