YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PEX28
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSETSSSRRS ASKDAVKSYF AGKYNKVLDS ILEAEAAISK SPTVAEDLSG SSSSGNSEMS  60
   61 HPSLTASSAT SQGISKKELL QQIAGSLFST SIERLKTAHS SEVSSTPEYS VNDSYGEQEC 120
  121 RECDGVFKCS AHFEGAPEYY DDETESGPAL EPMTSNSEKD PFIDVFLDKL ISRLVPEKLP 180
  181 EREHFSSKTT IEHDLDTGRV PVFSATTLGS NFKKLSKKMG SIFELQDSIV RLLTWRNPTG 240
  241 TVTSLILFTL ICFNPMYLVI LPIFRFVYGI VVPGYVRKHP LQRSIYPLKR NHGSSLLYDV 300
  301 CYEGKNEYSY GQQFFSKSFM DTLESRNQEI DEISELDKRT ENTGELKQGM KVLINLRDMQ 360
  361 NMTSGTLHVI EAINSFLRKS SSFQNEECST KRFFTGFLLI VFLKILSPFV NWSYVCSIFA 420
  421 WCLLIYMHPR AHPKIISFFK TGTMGKEYKN LKKREHQALN MIFDEQPETK FIEIFEIYKK 480
  481 ALLPNDWKFF RYSNRIFDPQ DPYRRAQQFP PGVDSLADVI PPTGWSFDPN FEWKIDNDVD 540
  541 RWVVERGLNL PITGEFLFDP MFKRRRLIHR VIKNATPVA

Type	Start	End	Confidence
Non-Cytoplasmic	1	240	0.53
Transmembrane Helix	241	268	0.65
Cytoplasmic	269	392	0.54
Transmembrane Helix	393	407	0.38
Non-Cytoplasmic	408	408	0.35
Transmembrane Helix	409	428	0.80
Cytoplasmic	429	579	0.60