YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YHR140W
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSCLVPTRF TLTLNTACLL TSTWGFVRAT SVVLPPSLSK AGHKQFLTII SIIATIINNA  60
   61 VNISNYYIQR NNKMNLETKK KSDFISRHVT LPVSLVLESI VATVYWPLRL FFVNLIMHGV 120
  121 ESTAKTPFPM TVDMAIHLYP ILYLLADHYL SGSGTKFKLS NKHAWLIVTS LAFSYFQYLA 180
  181 FLIDAGQGQA YPYPFLDVNE PYKSIIFVVV ATITWAYYVF YQKFPPKYIK KSAKKGDKN

Type	Start	End	Confidence
Cytoplasmic	1	9	0.85
Transmembrane Helix	10	30	0.83
Non-Cytoplasmic	31	45	0.84
Transmembrane Helix	46	68	0.90
Cytoplasmic	69	87	0.91
Transmembrane Helix	88	108	0.92
Non-Cytoplasmic	109	133	0.82
Transmembrane Helix	134	151	0.85
Cytoplasmic	152	162	0.85
Transmembrane Helix	163	183	0.92
Non-Cytoplasmic	184	201	0.92
Transmembrane Helix	202	221	0.94
Cytoplasmic	222	239	0.96