YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NSG1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKKKSKNQL NTGGVPNGVH NTKKEAALPP LGNKLGSASF TAINTLTKPA LFSFYDDDIT  60
   61 KNEGNVYDKA LLSNASQLEM VPPSATARHE RSLYAKIINT IAAFFILFIA GILFPMISEC 120
  121 LFDNDQLAKG DIVSFLKHGI EIKNKIVAEP DMVPDWAVFG TEGVIFGSIV PFIDSFVRYQ 180
  181 HQPKTRSSVY KNTLGSFIRC ANTLLGLIFG IRKLEWSSSL QAAGAWSLLN IVLWLFFDGT 240
  241 LTVFFPGLVI GALSAFTCSQ CFSQLSLALY FIDFYFFGFL MFSKLGRYLF N

Type	Start	End	Confidence
Cytoplasmic	1	96	0.98
Transmembrane Helix	97	117	0.93
Non-Cytoplasmic	118	155	0.98
Transmembrane Helix	156	177	0.87
Cytoplasmic	178	194	0.79
Transmembrane Helix	195	211	0.76
Non-Cytoplasmic	212	230	0.59
Transmembrane Helix	231	256	0.80
Cytoplasmic	257	264	0.49
Transmembrane Helix	265	286	0.80
Non-Cytoplasmic	287	291	0.63