YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190405880
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.73
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTVLKYLLL IMCGSFCASE ELQNQTNVPA IFFSYKLTPG ILKYQEDYDR AVTLPRDTFI  60
   61 EAAEKFLGVC NADTYVFINQ PGLRKLDFLE FETEFVSLQR YIRRSSTAIK FEKVDLLPQD 120
  121 LYYDLAEFVK EYCNVDQVLN LRGNNTEDFQ PFIDSEKRVI IIEYPKLPED TNERKEAFRH 180
  181 YDKYLRTILA QIPSPEQNVI YTSLNPGTTL AHESIIPIQI FPDIFDIKSR VGEVEQNNRV 240
  241 LDVPRLSFND YTPRFSEPPS EYVSIFDSQL IENNRGLLQL IFTILVGYIL IQFFFTKKTI 300
  301 VDEKITNKKD NVKQTSPQLL KKVQEIQKKP SQQVS

Type	Start	End	Confidence
Signal Peptide	1	19	0.91
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	275	0.99
Transmembrane Helix	276	296	0.74
Cytoplasmic	297	335	0.78