YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92096439
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	70	0.96
Transmembrane Helix	71	90	0.92
Non-Cytoplasmic	91	98	0.80
Transmembrane Helix	99	118	0.96
Cytoplasmic	119	138	0.86
Transmembrane Helix	139	162	0.89
Non-Cytoplasmic	163	221	0.98
Transmembrane Helix	222	243	0.93
Cytoplasmic	244	251	0.90
Transmembrane Helix	252	274	0.89
Non-Cytoplasmic	275	300	0.94
Transmembrane Helix	301	322	0.89
Cytoplasmic	323	333	0.83
Transmembrane Helix	334	355	0.80
Non-Cytoplasmic	356	445	0.86
Transmembrane Helix	446	466	0.91
Cytoplasmic	467	486	0.84
Transmembrane Helix	487	507	0.91
Non-Cytoplasmic	508	518	0.81
Transmembrane Helix	519	541	0.94
Cytoplasmic	542	561	0.96
Transmembrane Helix	562	583	0.95
Non-Cytoplasmic	584	614	0.92
Transmembrane Helix	615	637	0.92
Cytoplasmic	638	660	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTSDVPGQRR SIKGLSISVS SHTLSLTHTL TMKLKLPNPG LEQRIPSHSE LEKLELQEAG  60
   61 ERPKWDNKAQ YMLTCVGFCV GLGNVWRFPY LCQSHGGGAF MIPFLILLVL EGVPLLHLEF 120
  121 AIGQRLRSGS VGVWRSISPY LTGVGIASML ASFIVGMYYN TIMAWVMWYL FNSLQEPLPW 180
  181 SQCPVNLNRT GLVSECERSS PVDYFWYRET LNTSTAIEDS GALQWWLVLC LLCAWTFLYI 240
  241 CCIRGIETTG KAVYITSTLP YVVLTIFLIR ALTLKGSVNG IKFLFTPDVN ELMNPSTWLD 300
  301 AGAQVLFSFS LAFGGLISFS SYNSVHNNCE QDAVTISIIN GLTSVYSATV IYSIIGFRAT 360
  361 ENYDICLDSN ILSLLNAFDL PEGSITENNY TVALQQLNIS RPDIIQELQL KTCDMQTLLS 420
  421 EGVEGTGLAF IVFTEAITKM PVSPLWSVLF FIMLFCLGLS TMFGNIEGVV VPLQDLNLLP 480
  481 KRWPKEVFTG LTCVVSFLTA LVFVQSSGNY WLALFDGFAG SIPLLVIALC ELIAVVYVYG 540
  541 IDRFNEDIKF MVGHKPNIFW QISWRFLSPV ILLVILIFYF ITTVSKQLTY NVWDPQSADF 600
  601 PTLKEVDYPN WISVVIFVLA GVPSLCIPGV AIGRALWRCC TRRKHKSISE KQQMSVNTIA 660
  661