YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LEU5
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRDSPDSND SYKHINKNTT QKTSFDRNSF DYIVRSGLAG GISGSCAKTL IAPLDRIKIL  60
   61 FQTSNPHYTK YTGSLIGLVE AAKHIWINDG VRGFFQGHSA TLLRIFPYAA VKFVAYEQIR 120
  121 NTLIPSKEFE SHWRRLVSGS LAGLCSVFIT YPLDLVRVRL AYETEHKRVK LGRIIKKIYK 180
  181 EPASATLIKN DYIPNWFCHW CNFYRGYVPT VLGMIPYAGV SFFAHDLLHD VLKSPFFAPY 240
  241 SVLELSEDDE LERVQKKQRR PLRTWAELIS GGLAGMASQT AAYPFEIIRR RLQVSALSPK 300
  301 TMYDHKFQSI SEIAHIIFKE RGVRGFFVGL SIGYIKVTPM VACSFFVYER MKWNFGI

Type	Start	End	Confidence
Cytoplasmic	1	135	0.63
Transmembrane Helix	136	153	0.62
Non-Cytoplasmic	154	205	0.71
Transmembrane Helix	206	225	0.55
Cytoplasmic	226	263	0.68
Transmembrane Helix	264	283	0.59
Non-Cytoplasmic	284	325	0.60
Transmembrane Helix	326	348	0.64
Cytoplasmic	349	357	0.39