YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COS8
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKENEVKDEK SVDVLSFKQL EFQKTVLPQD VFRNELTWFC YEIYKSLAFR IWMLLWLPLS  60
   61 VWWKLSSNWI HPLIVSLLVL FLGPFFVLVI CGLSRKRSLS KQLIQFCKEI TEDTPSSDPH 120
  121 DWEVVAANLN SYFYENKTWN TKYFFFNAMS CQKAFKTTLL EPFSLKKDES AKVKSFKDSV 180
  181 PYIEEALQVY AAGFDKEWKL FNTEKEESPF DLEDIQLPKE AYRFKLTWIL KRIFNLRCLP 240
  241 LFLYYFLIVY TSGNADLISR FLFPVVMFFI MTRDFQNMRM IVLSVKMEHK MQFLSTIINE 300
  301 QESGANGWDE IAKKMNRYLF EKKVWNNEEF FYDGLDCEWF FRRFFYRLLS LKKPMWFASL 360
  361 NVELWPYIKE AQSARNEKPL K

Type	Start	End	Confidence
Cytoplasmic	1	45	0.95
Transmembrane Helix	46	65	0.86
Non-Cytoplasmic	66	72	0.71
Transmembrane Helix	73	93	0.95
Cytoplasmic	94	232	0.99
Transmembrane Helix	233	251	0.92
Non-Cytoplasmic	252	256	0.78
Transmembrane Helix	257	277	0.79
Cytoplasmic	278	381	0.89