YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YHL017W
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	192	0.99
Transmembrane Helix	193	213	0.96
Cytoplasmic	214	225	0.85
Transmembrane Helix	226	246	0.96
Non-Cytoplasmic	247	263	0.85
Transmembrane Helix	264	290	0.83
Cytoplasmic	291	301	0.79
Transmembrane Helix	302	319	0.96
Non-Cytoplasmic	320	330	0.76
Transmembrane Helix	331	351	0.95
Cytoplasmic	352	376	0.92
Transmembrane Helix	377	399	0.92
Non-Cytoplasmic	400	419	0.87
Transmembrane Helix	420	437	0.94
Cytoplasmic	438	532	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRTWLLLTW LLLLCGVVQG NQESINQKYH DVCSGMYSKE DFNGKVDPYI SFTLEELSLA  60
   61 DEDDDGEGVS VAVFDFQDYE HIGVRLPNGE IQYICDDYAL DLGLCEDSSE GQFIIQETAI 120
  121 DPFTSKEHKL TSQILTFTQQ ELGTNDKVYS INKTGYYCVT TSSFISSSSK FKATVNFRNA 180
  181 YGQLDASEAY KMPIYAFLAV AYAVCTLVYS WLCWKHRHEL LPLQRYILVF CIFLTADTIF 240
  241 VWMYYIIENQ KGNSSVALHV YMVFISIFSA GKMTFTLLLA LLISLGYGIV YPKLDRTLLR 300
  301 RCQIFAIFTF AVCVAFLVQK YSQNSESLSN LILITAIPLV LCLFAFYYLT LSSMNKTMTY 360
  361 LREQNQVVKL NMYRKLIILC YISLFILFLG LLVSTFAYVG MDTVDMIEQY WKTEFLITDT 420
  421 WPSFVYFLVF VIFAFFWRPT STSYLLACSH QLPTDMENVS EFDLDDINSL SDEALPNREP 480
  481 RNDYQEHDHN MDIDLASDFE EVPSVNANTN ANNDVLFDVD YDRDAKNDRS TT