YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DUR3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.97
Transmembrane Helix	12	35	0.92
Cytoplasmic	36	54	0.94
Transmembrane Helix	55	76	0.90
Non-Cytoplasmic	77	85	0.88
Transmembrane Helix	86	108	0.89
Cytoplasmic	109	134	0.89
Transmembrane Helix	135	155	0.91
Non-Cytoplasmic	156	164	0.73
Transmembrane Helix	165	185	0.94
Cytoplasmic	186	194	0.77
Transmembrane Helix	195	214	0.94
Non-Cytoplasmic	215	253	0.95
Transmembrane Helix	254	276	0.88
Cytoplasmic	277	291	0.90
Transmembrane Helix	292	316	0.87
Non-Cytoplasmic	317	341	0.88
Transmembrane Helix	342	364	0.73
Cytoplasmic	365	397	0.82
Transmembrane Helix	398	420	0.91
Non-Cytoplasmic	421	427	0.76
Transmembrane Helix	428	448	0.94
Cytoplasmic	449	454	0.84
Transmembrane Helix	455	476	0.92
Non-Cytoplasmic	477	495	0.90
Transmembrane Helix	496	517	0.94
Cytoplasmic	518	618	0.99
Transmembrane Helix	619	639	0.93
Non-Cytoplasmic	640	650	0.90
Transmembrane Helix	651	675	0.88
Cytoplasmic	676	735	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEFKPPLPQ GAGYAIVLGL GAVFAGMMVL TTYLLKRYQK EIITAEEFTT AGRSVKTGLV  60
   61 AAAVVSSWIW CSTLLTSSTK EYADGIFGGY AYAAGACFQI IAFAILAIKT KQMAPNAHTY 120
  121 LELVRTRYGK IGHGCYLFYA IATNILVTSM LLTSGSAVFS DLTGMNTIAS CFLLPVGVVV 180
  181 YTLFGGIKAT FLTDYMHTCV IIIIVLVFAF KVYATSDVLG SPGKVYDLVR EAAKRHPVDG 240
  241 NYQGEYMTMT SKSAGILLII NLIGNFGTVF LDNGYWNKAI SASPAASLKA YAIGGLAWFA 300
  301 VPSLISLTMG LACLAVETSP NFPTYPDPLT SFQANSGLVL PAAAIAIMGK GGAVASLLMI 360
  361 FMAVTSAMSA ELIAVSSVFT YDIYREYIDP RASGKKLIYT SHVACIFFGL AMSGFSVGLY 420
  421 YGGISMGYIY EMMGIIISSA VLPVVLTLCS KDMNLVAAVV SPILGTGLAI MSWLVCTKSL 480
  481 YKELTVDTTF MDYPMLTGNL VALLSPAIFI PILTYVFKPQ NFDWEKMKDI TRVDETAELV 540
  541 QADPDIQLYD AEANDKEQEE ETNSLVSDSE KNDVRVNNEK LIEPNLGVVI SNAIFQEDDT 600
  601 QLQNELDEEQ RELARGLKIA YFLCVFFALA FLVVWPMPMY GSKYIFSKKF FTGWVVVMII 660
  661 WLFFSAFAVC IYPLWEGRHG IYTTLRGLYW DLSGQTYKLR EWQNSNPQDL HVVTSQISAR 720
  721 AHRQSSHFGQ VDEII