YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	pst-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLSNASVGY LNYPTQVIFK CCKLIPVLIG GILIQGKRYG WIDIGAAMLM SLGIIMFTLA  60
   61 DNKVSPNFDS RGYIMICGAL LADAVIGNIQ EKNMKKYGGS SNEMVLYSYG IGSVFIFAFV 120
  121 VLSGEVFSAI PFFLENSWKT FGYALILSCL GYLGVNVVLT HIKVFGALVA VTVTTLRKAL 180
  181 TIILSFMLFS KPFTIEYVYA GSVVMLAIYL NLYSKNKTSW DNMIRRFVAR AMGYHDVSVA 240
  241 RKDPMTV

Type	Start	End	Confidence
Cytoplasmic	1	38	0.76
Transmembrane Helix	39	60	0.92
Non-Cytoplasmic	61	69	0.85
Transmembrane Helix	70	89	0.86
Cytoplasmic	90	104	0.86
Transmembrane Helix	105	129	0.85
Non-Cytoplasmic	130	139	0.76
Transmembrane Helix	140	160	0.89
Cytoplasmic	161	166	0.62
Transmembrane Helix	167	189	0.74
Non-Cytoplasmic	190	194	0.70
Transmembrane Helix	195	213	0.89
Cytoplasmic	214	247	0.84