YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ERV29
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.25
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYRGPIGNF GGMPMSSSQG PYSGGAQFRS NQNQSTSGIL KQWKHSFEKF ASRIEGLTDN  60
   61 AVVYKLKPYI PSLSRFFIVA TFYEDSFRIL SQWSDQIFYL NKWKHYPYFF VVVFLVVVTV 120
  121 SMLIGASLLV LRKQTNYATG VLCACVISQA LVYGLFTGSS FVLRNFSVIG GLLIAFSDSI 180
  181 VQNKTTFGML PELNSKNDKA KGYLLFAGRI LIVLMFIAFT FSKSWFTVVL TIIGTICFAI 240
  241 GYKTKFASIM LGLILTFYNI TLNNYWFYNN TKRDFLKYEF YQNLSIIGGL LLVTNTGAGE 300
  301 LSVDEKKKIY

Type	Start	End	Confidence
Cytoplasmic	1	72	0.73
Transmembrane Helix	73	87	0.25
Non-Cytoplasmic	88	105	0.48
Transmembrane Helix	106	130	0.89
Cytoplasmic	131	136	0.44
Transmembrane Helix	137	157	0.85
Non-Cytoplasmic	158	160	0.49
Transmembrane Helix	161	181	0.73
Cytoplasmic	182	201	0.62
Transmembrane Helix	202	221	0.80
Non-Cytoplasmic	222	224	0.46
Transmembrane Helix	225	242	0.71
Cytoplasmic	243	245	0.40
Transmembrane Helix	246	268	0.66
Non-Cytoplasmic	269	279	0.47
Transmembrane Helix	280	299	0.47
Cytoplasmic	300	310	0.69