YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TNA1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	87	0.97
Transmembrane Helix	88	105	0.77
Non-Cytoplasmic	106	124	0.77
Transmembrane Helix	125	143	0.81
Cytoplasmic	144	154	0.74
Transmembrane Helix	155	177	0.88
Non-Cytoplasmic	178	182	0.88
Transmembrane Helix	183	205	0.88
Cytoplasmic	206	215	0.80
Transmembrane Helix	216	238	0.91
Non-Cytoplasmic	239	250	0.85
Transmembrane Helix	251	271	0.94
Cytoplasmic	272	322	0.96
Transmembrane Helix	323	344	0.91
Non-Cytoplasmic	345	355	0.73
Transmembrane Helix	356	375	0.94
Cytoplasmic	376	383	0.84
Transmembrane Helix	384	403	0.95
Non-Cytoplasmic	404	410	0.75
Transmembrane Helix	411	431	0.95
Cytoplasmic	432	443	0.80
Transmembrane Helix	444	465	0.93
Non-Cytoplasmic	466	473	0.88
Transmembrane Helix	474	496	0.91
Cytoplasmic	497	534	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNKFTMESP KHLVDDVLFI SPTNDGSEEK PTEVTFQEDE GHDASLHNRS HDKKSELATE  60
   61 REIMATTTDD DGIPSPSHPM EKRVLRKMDI YLIPLMGMLY FLSNLDKSNI GNAEVAGLSK 120
  121 DIHLVGTQYN TCVTVFFATY VLFDPIGTNL LKIMGPPLMM SICLTCFGAI SLGTAWVKNY 180
  181 AQLIVVRLLL GAFEGMIYPA INMYLSVCYR REQYALRFAF VFSAACLSSS FGGLIAYGCS 240
  241 KISGSLKDWQ YIYIVEGCIS LGFVPFYAFG LSKNLEDSWF FNKEEKEYIS ERYKTMNTFD 300
  301 PDEKFEWFQV WQAVKDVKTW ASAVALFGID LTTFGLTVFL PIIITSMGFT NVRAQLMTVP 360
  361 IYFLTAIVFF ICAVWSDRIK LRSPFILGAC LTTSIGIAIV LGSQVHGVRY FGVYILCMGI 420
  421 YVNAACNCLW LSGNTGNYFK RATALGINLF FGSGSGLVSG QIFVAKDKPR YIKGLSISLA 480
  481 FQVFSIFMTV VQIFLYKREN DKKKAIIDRC NELGEPIPYD ERLSDKNPEF KYMY