YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MTM1
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDRNTSNSL TLKERMLSAG AGSVLTSLIL TPMDVVRIRL QQQQMIPDCS CDGAAEVPNA  60
   61 VSSGSKMKTF TNVGGQNLNN AKIFWESACF QELHCKNSSL KFNGTLEAFT KIASVEGITS 120
  121 LWRGISLTLL MAIPANMVYF SGYEYIRDVS PIASTYPTLN PLFCGAIARV FAATSIAPLE 180
  181 LVKTKLQSIP RSSKSTKTWM MVKDLLNETR QEMKMVGPSR ALFKGLEITL WRDVPFSAIY 240
  241 WSSYELCKER LWLDSTRFAS KDANWVHFIN SFASGCISGM IAAICTHPFD VGKTRWQISM 300
  301 MNNSDPKGGN RSRNMFKFLE TIWRTEGLAA LYTGLAARVI KIRPSCAIMI SSYEISKKVF 360
  361 GNKLHQ

Type	Start	End	Confidence
Cytoplasmic	1	120	0.67
Transmembrane Helix	121	140	0.71
Non-Cytoplasmic	141	158	0.76
Transmembrane Helix	159	182	0.56
Cytoplasmic	183	265	0.71
Transmembrane Helix	266	287	0.70
Non-Cytoplasmic	288	366	0.58