YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPG1
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLDSGIYSE AQRVVRTPKF RYIMLGLVGA AVVPTAYMRR GYTVPAHSLD NINGVDTTKA  60
   61 SVMGTEQRAA MTKGKSLQEM MDDDEVTYLM FLFNHVREFV LGSLHLCSLH FVFAFNHSTT 120
  121 NGEGDCDFT

Type	Start	End	Confidence
Cytoplasmic	1	19	0.85
Transmembrane Helix	20	38	0.85
Non-Cytoplasmic	39	129	0.78