YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AZR1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	63	0.98
Transmembrane Helix	64	87	0.89
Non-Cytoplasmic	88	103	0.90
Transmembrane Helix	104	125	0.90
Cytoplasmic	126	133	0.85
Transmembrane Helix	134	152	0.95
Non-Cytoplasmic	153	162	0.60
Transmembrane Helix	163	183	0.92
Cytoplasmic	184	190	0.87
Transmembrane Helix	191	213	0.92
Non-Cytoplasmic	214	222	0.78
Transmembrane Helix	223	243	0.89
Cytoplasmic	244	294	0.94
Transmembrane Helix	295	318	0.91
Non-Cytoplasmic	319	327	0.83
Transmembrane Helix	328	351	0.91
Cytoplasmic	352	377	0.91
Transmembrane Helix	378	399	0.90
Non-Cytoplasmic	400	413	0.90
Transmembrane Helix	414	435	0.95
Cytoplasmic	436	443	0.87
Transmembrane Helix	444	463	0.95
Non-Cytoplasmic	464	470	0.85
Transmembrane Helix	471	492	0.90
Cytoplasmic	493	582	0.58
Transmembrane Helix	583	604	0.85
Non-Cytoplasmic	605	613	0.42

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGEPKTYSM SDLSYYGEKA QQQNEKQQKQ YVVRRNSTQS TSKQNVSVVL EDNASESNEL  60
   61 PKGFILYASL IALALSLFLA ALDIMIVSTI IEEVAKQFGS YSEIGWLFTG YSLPNALLAL 120
  121 IWGRIATPIG FKETMLFAIV IFEIGSLISA LANSMSMLIG GRVIAGVGGC GIQSLSFVIG 180
  181 STLVEESQRG ILIAVLSCSF AIASVVGPFL GGVFTSSVTW RWCFYVNLPI GGLAFFLFLF 240
  241 FYNPGLSTFQ ETMDNIRKFP SQFIEIVRNV AYHLLKIKGF SKLNGWRKPF MELIFMYDII 300
  301 EFVFCSAGFT CILLAFTFGG NRYAWNSASI IILFIIGIVL VVLAGIYDFL VFPKFNIVKA 360
  361 TPHYQPLMSW TNIKKPGIFT VNIALFLTCA GYISQFTYIV QYFQLIYNDS AWRAAVHLVA 420
  421 CIISTVVTAI LCGAITDKTR QIKPIIVISS IFGVVGAGIL TLLNNNANNS AHIGLLILPG 480
  481 VAFGGLAQSS MLASQIQLDK KSPTFRSDFV SITTFNTFCK NLGQALGGVI SNTVFSAAAI 540
  541 KKLTKANIQL PDGTTVDNLV IYRQTNFDGS HSKLGNIISE SLTDVFYMAL GFYALSLIFA 600
  601 VFASNKKVTA SLR