YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	POPD1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFTEPSPLA QSTVVGFLPE LESLTPVPSN ETSCENWREV HHLVFHAANV CFAVGLLIPT  60
   61 TLHLHMILLR VMLSIGCTLY VVWATLYRCA LDMMIWNSVF LGINILHLSY LLYKKRPVKI 120
  121 EKDLGGVYHR LFEPLRVPPD LFRRLTGQFC VIQTLKRGQV YATEDKTSVD DRLSILLKGR 180
  181 MKVSYRGHFL HNIYPCAFID SPEFRSTQMH KGEKFQVTIV ADDNCRFLCW SRERLTYFLE 240
  241 SEPFLYEIFR YLIGKDITNK LYSLNDPTLN DKKVKKLEPQ MSLSTQISML EMRNSITSSS 300
  301 DIEDGLHHFL RGSSSTASLP MSSPQQRASP KMKPIEEGLE DDDEVFVPVS PAHQLP

Type	Start	End	Confidence
Cytoplasmic	1	49	0.65
Transmembrane Helix	50	84	0.71
Non-Cytoplasmic	85	92	0.43
Transmembrane Helix	93	113	0.80
Cytoplasmic	114	356	0.71