YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RTA1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKDGFELYR YTPELGASIL FTVLFAVSGV AFVILLFHYS VKSKRRVGSL MKSQPVLRYY  60
   61 GTVNLAGAYI PFIFGCFVEC VGFAFRCKSS KDTTLLNPYI IQTVFLLVSP TLYAASIYMI 120
  121 FGRMATLLFA ENLMIMPARF NTTIFVIGDV GSLLLQAIGG AMMSKVTSAS SGSHLVTAGL 180
  181 FIQIAFFGLF IINEVLFIFK MSKKPTNVSV RYGSWKYLNI ALLVNSFLIL IRSIVRAVEF 240
  241 IQGYDGEIAS HEWYLYIFDG LPMFLLVLIF IVAFPLINIF RIHEESIQAQ QSARFDGTDY 300
  301 PDVEVTSIEE DLASKSE

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.94
Transmembrane Helix	17	39	0.93
Cytoplasmic	40	58	0.88
Transmembrane Helix	59	81	0.86
Non-Cytoplasmic	82	98	0.88
Transmembrane Helix	99	122	0.87
Cytoplasmic	123	139	0.86
Transmembrane Helix	140	160	0.91
Non-Cytoplasmic	161	174	0.82
Transmembrane Helix	175	198	0.87
Cytoplasmic	199	214	0.91
Transmembrane Helix	215	235	0.91
Non-Cytoplasmic	236	255	0.90
Transmembrane Helix	256	280	0.84
Cytoplasmic	281	317	0.98