YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HIP1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	94	0.97
Transmembrane Helix	95	116	0.88
Non-Cytoplasmic	117	127	0.73
Transmembrane Helix	128	155	0.76
Cytoplasmic	156	174	0.64
Transmembrane Helix	175	194	0.79
Non-Cytoplasmic	195	204	0.76
Transmembrane Helix	205	222	0.90
Cytoplasmic	223	236	0.77
Transmembrane Helix	237	259	0.89
Non-Cytoplasmic	260	279	0.90
Transmembrane Helix	280	303	0.85
Cytoplasmic	304	321	0.93
Transmembrane Helix	322	342	0.94
Non-Cytoplasmic	343	379	0.93
Transmembrane Helix	380	402	0.90
Cytoplasmic	403	422	0.92
Transmembrane Helix	423	442	0.94
Non-Cytoplasmic	443	448	0.88
Transmembrane Helix	449	469	0.94
Cytoplasmic	470	498	0.91
Transmembrane Helix	499	519	0.92
Non-Cytoplasmic	520	530	0.80
Transmembrane Helix	531	551	0.88
Cytoplasmic	552	603	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRNPLKKEY WADVVDGFKP ATSPAFENEK ESTTFVTELT SKTDSAFPLS SKDSPGINQT  60
   61 TNDITSSDRF RRNEDTEQED INNTNLSKDL SVRHLLTLAV GGAIGTGLYV NTGAALSTGG 120
  121 PASLVIDWVI ISTCLFTVIN SLGELSAAFP VVGGFNVYSM RFIEPSFAFA VNLNYLAQWL 180
  181 VLLPLELVAA SITIKYWNDK INSDAWVAIF YATIALANML DVKSFGETEF VLSMIKILSI 240
  241 IGFTILGIVL SCGGGPHGGY IGGKYWHDPG AFVGHSSGTQ FKGLCSVFVT AAFSYSGIEM 300
  301 TAVSAAESKN PRETIPKAAK RTFWLITASY VTILTLIGCL VPSNDPRLLN GSSSVDAASS 360
  361 PLVIAIENGG IKGLPSLMNA IILIAVVSVA NSAVYACSRC MVAMAHIGNL PKFLNRVDKR 420
  421 GRPMNAILLT LFFGLLSFVA ASDKQAEVFT WLSALSGLST IFCWMAINLS HIRFRQAMKV 480
  481 QERSLDELPF ISQTGVKGSW YGFIVLFLVL IASFWTSLFP LGGSGASAES FFEGYLSFPI 540
  541 LIVCYVGHKL YTRNWTLMVK LEDMDLDTGR KQVDLTLRRE EMRIERETLA KRSFVTRFLH 600
  601 FWC