YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YIP1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFYNTSNNA NNGGGFYQPS AQFAVPQGSM SFQNTVGSSN TGNDNNLGVA PDPLPVGILH  60
   61 ALSTKGYPHE PPLLEEIGIN FDHIITKTKM VLIPIRFGSG VPQEILNDSD LAGPLIFFLL 120
  121 FGLFLLMAGK VHFGYIYGVA LFGTISLHNL SKLMSNNDTS TQTNLQFFNT ASILGYCFLP 180
  181 LCFLSLLGIF HGLNNTTGYV VSVLFVIWST WTSSGFLNSL LQLQNARLLI AYPLLIFYSV 240
  241 FALMVIFV

Type	Start	End	Confidence
Cytoplasmic	1	110	0.91
Transmembrane Helix	111	128	0.88
Non-Cytoplasmic	129	132	0.63
Transmembrane Helix	133	151	0.79
Cytoplasmic	152	166	0.71
Transmembrane Helix	167	190	0.87
Non-Cytoplasmic	191	197	0.61
Transmembrane Helix	198	220	0.87
Cytoplasmic	221	227	0.69
Transmembrane Helix	228	247	0.95
Non-Cytoplasmic	248	248	0.80