YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YGR168C
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.35
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHNRPNGTG KAVSGFKQII RRLLLLLNKK RRKQLVIILK RITQVYGINL VFYVKKWKLK  60
   61 KLQGENIQIN DIMPWLREST ILVLLNILYP TLMKFPFLKN HYIHWSSIVG ISLMLTKGEV 120
  121 PSWIIAHFLV EAIASKLKIA KLTQWLKKKN FSQGTLIKFQ QILVCLAIIV LFAKLDRSSL 180
  181 PFRVLFDHRP FLIDFFTINA IFTVLAVYHR TLKFFFTSGT KSNKNVGGHE VRNFSQYLGV 240
  241 KNHNDWPISS SNLKHVMDRL NEIHEVTIDD NYANINEKII NSYFTKGFFP SLKWTILRQC 300
  301 IEYLFVTKRR RLMGNKLRCI VMLLTFTFVD PTSKMKISPF FAKFFAKSLV NVYLKKYWHC 360
  361 NFGKYILFFL FQLSIM

Type	Start	End	Confidence
Cytoplasmic	1	79	0.88
Transmembrane Helix	80	98	0.55
Non-Cytoplasmic	99	112	0.48
Transmembrane Helix	113	135	0.54
Cytoplasmic	136	154	0.70
Transmembrane Helix	155	175	0.87
Non-Cytoplasmic	176	190	0.77
Transmembrane Helix	191	212	0.84
Cytoplasmic	213	316	0.79
Transmembrane Helix	317	332	0.35
Non-Cytoplasmic	333	376	0.51