YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PEX13_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASQPPPPPK PWETRRIPGT GPGPGPGPTF QSAELGPTLL TRPGQPTLTR VPPPILPRPS  60
   61 QQTGSGNLNT FRPAYSSFSS GYGAYGNSFY GSYSPYSYGY NGLGYNRLRI DDLPPSRFVQ 120
  121 QAEESSRGAF QSIESIVHAF ASVSMMMDAT FSAVYNSFRA VLDVANHFSR LKIHFTKVFS 180
  181 AFALVRTIRY LYRRLQWMIG LRRGLENEDL WAESEGTVAC LGAEDRAANS AKSWPIFLFF 240
  241 AVILGGPYLI WKLLSTHSDE VTDSTNWASG EDDHVVARAE YDFVAVSEEE ISFRAGDMLN 300
  301 LALKEQQPRV RGWLLASLDG QTTGLIPANY VKILGKRRGR KTVESSRISK QQQSFTNTTL 360
  361 IKGATAADSL DDQEAAFESV FVETNKVPVA SDSTGKNGDK QDL

Type	Start	End	Confidence
Cytoplasmic	1	135	0.81
Transmembrane Helix	136	155	0.67
Non-Cytoplasmic	156	172	0.71
Transmembrane Helix	173	192	0.68
Cytoplasmic	193	233	0.84
Transmembrane Helix	234	251	0.87
Non-Cytoplasmic	252	403	0.87