YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TPO2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	171	0.96
Transmembrane Helix	172	194	0.91
Non-Cytoplasmic	195	206	0.73
Transmembrane Helix	207	226	0.96
Cytoplasmic	227	236	0.80
Transmembrane Helix	237	256	0.93
Non-Cytoplasmic	257	262	0.68
Transmembrane Helix	263	285	0.87
Cytoplasmic	286	295	0.82
Transmembrane Helix	296	318	0.90
Non-Cytoplasmic	319	327	0.83
Transmembrane Helix	328	354	0.81
Cytoplasmic	355	394	0.97
Transmembrane Helix	395	422	0.79
Non-Cytoplasmic	423	437	0.86
Transmembrane Helix	438	460	0.92
Cytoplasmic	461	478	0.98
Transmembrane Helix	479	498	0.96
Non-Cytoplasmic	499	504	0.73
Transmembrane Helix	505	527	0.89
Cytoplasmic	528	546	0.82
Transmembrane Helix	547	566	0.89
Non-Cytoplasmic	567	573	0.81
Transmembrane Helix	574	595	0.94
Cytoplasmic	596	614	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDQESVVSF NSQNTSMVDV EGQQPQQYVP SKTNSRANQL KLTKTETVKS LQDLGVTSAA  60
   61 PVPDINAPQT AKNNIFPEEY TMETPSGLVP VATLQSMGRT ASALSRTRTK QLNRTATNSS 120
  121 STGKEEMEEE ETEEREDQSG ENELDPEIEF VTFVTGDPEN PHNWPSWVRW SYTVLLSILV 180
  181 ICVAYGSACI SGGLGTVEKK YHVGMEAAIL SCSLMVIGFS LGPLIWSPVS DLYGRRVAYF 240
  241 VSMGLYVIFN IPCALAPNLG CLLACRFLCG VWSSSGLCLV GGSIADMFPS ETRGKAIAFF 300
  301 AFAPYVGPVV GPLVNGFISV STGRMDLIFW VNMAFAGVMW IISSAIPETY APVILKRKAA 360
  361 RLRKETGNPK IMTEQEAQGV SMSEMMRACL LRPLYFAVTE PVLVATCFYV CLIYSLLYAF 420
  421 FFAFPVIFGE LYGYKDNLVG LMFIPIVIGA LWALATTFYC ENKYLQIVKQ RKPTPEDRLL 480
  481 GAKIGAPFAA IALWILGATA YKHIIWVGPA SAGLAFGFGM VLIYYSLNNY IIDCYVQYAS 540
  541 SALATKVFLR SAGGAAFPLF TIQMYHKLNL HWGSWLLAFI STAMIALPFA FSYWGKGLRH 600
  601 KLSKKDYSID SVEM