YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190406862
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.95
Transmembrane Helix	19	40	0.95
Cytoplasmic	41	49	0.82
Transmembrane Helix	50	70	0.95
Non-Cytoplasmic	71	111	0.95
Transmembrane Helix	112	131	0.94
Cytoplasmic	132	140	0.77
Transmembrane Helix	141	160	0.96
Non-Cytoplasmic	161	173	0.88
Transmembrane Helix	174	195	0.91
Cytoplasmic	196	208	0.85
Transmembrane Helix	209	228	0.91
Non-Cytoplasmic	229	240	0.81
Transmembrane Helix	241	261	0.95
Cytoplasmic	262	268	0.92
Transmembrane Helix	269	288	0.91
Non-Cytoplasmic	289	293	0.65
Transmembrane Helix	294	314	0.86
Cytoplasmic	315	325	0.85
Transmembrane Helix	326	350	0.82
Non-Cytoplasmic	351	373	0.94
Transmembrane Helix	374	397	0.91
Cytoplasmic	398	492	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESRTTGPLT TETYDGPTVA FMILGAALVF FMVPGLGFLY SGLARRKSAL ALIWVVLMAT  60
   61 LVGILQWYFW GYSLAFSKSA PNNKFIGNLD SFGFRNVYGK KFDEDAYPEL AYATFQMMFS 120
  121 CVNLSIIAGA TAERGRLLPH MVFLFILATI GYCPVTYWIW SPGGWAYQWG VLDWAGGGNI 180
  181 EILSAVSGFV YSWFLGKRNE KLLINFRPHN VSLVTLGTSI LWFGWLLFNS ASSLSPNLRS 240
  241 VYAFMNTCLS AITGGMTWCL LDYRSEKKWS TVGLCSGIIS GLVAATPSSG CITLYGSLIQ 300
  301 GIVAGVVCNF ATKLKYYAKV DDAMDILAEH GVAGVIGLIF NALFGADWVI GMDGTTEHEG 360
  361 GWVTHNYKQM YKQIAYIAAS IGYTAAVTAI ICFVLGYIPG MRLRISEEAE EAGMDEDQIG 420
  421 EFAYDYVEVR RDYYLWGVDE DSQRSDVNHR VNNAHLAAER SSSGTNSSSD GNGEMIQSEK 480
  481 ILPIHQEDPA NR