YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VOA1
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFGQLYALF IFTLSCCISK TVQADSSKES SSFISFDKES NWDTISTISS TADVISSVDS  60
   61 AIAVFEFDNF SLLDNLMIDE EYPFFNRFFA NDVSLTVHDD SPLNISQSLS PIMEQFTVDE 120
  121 LPESASDLLY EYSLDDKSIV LFKFTSDAYD LKKLDEFIDS CLSFLEDKSG DNLTVVINSL 180
  181 GWAFEDEDGD DEYATEETLS HHDNNKGKEG DDDILSSIWT EGLLMCLIVS ALLLFILIVA 240
  241 LSWISNLDIT YGALEKSTNP IKKNN

Type	Start	End	Confidence
Signal Peptide	1	24	0.95
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	222	0.96
Transmembrane Helix	223	244	0.90
Cytoplasmic	245	265	0.88