YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190337020, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCFLTTLTSC DTLERPMEST TTLTTANSQF KRIDNTTLLI PSAPLHHHIN NAVLGIFLGM  60
   61 LSLLTVIMNL LVLFAVRKER TLHTVGNLYI VSLSIADLIV GATVMPLNLV YLLEDQWKLG 120
  121 HVVCQFWLVM DYVASTASIF SLFILCLDRY RSVRHPLQYL KYRTRGRATL LICSAWLLSM 180
  181 TWTIPILGWR MFASVDKKTE LENQCDTDFR FVTWFKVLTA ILNFYIPSFL MLVFYSQIFI 240
  241 AVRDHYREWE NFAGPALKTD ATDTLTNGLQ LQITKASEKE SLALNAYSQN EGLLDQYSLE 300
  301 QPYNSRENTE EMTSEPKRKM CYKKKAIFNL SKRMRKSVPD SEISFQSDDG ETVAEGRPSL 360
  361 SLAFLQSENT AQPQTFINVS DCNVLVPNSV GNICESAPTV DIHNYTAVLC TPPSPPSPWA 420
  421 ENSPPLDASI ALPAKQSWQK LCEQSKQSIH SMRIRKERKA ARQLGFIIGV FMVCWIPYFI 480
  481 TFMVMALCET CVHHDLHMFT IWLGYINSTL NPFIYPLCNE NFKRVFKKIF HMSR

Type	Start	End	Confidence
Non-Cytoplasmic	1	51	0.96
Transmembrane Helix	52	75	0.91
Cytoplasmic	76	84	0.89
Transmembrane Helix	85	107	0.89
Non-Cytoplasmic	108	126	0.85
Transmembrane Helix	127	147	0.94
Cytoplasmic	148	167	0.91
Transmembrane Helix	168	186	0.96
Non-Cytoplasmic	187	218	0.92
Transmembrane Helix	219	239	0.91
Cytoplasmic	240	462	0.99
Transmembrane Helix	463	482	0.94
Non-Cytoplasmic	483	497	0.77
Transmembrane Helix	498	518	0.89
Cytoplasmic	519	534	0.92