YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190406926
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVSPAIVKG IAVSSLGLYA GILTSSTVIS ITTPINVLTQ HLKNVLCTLG CWSTVLGGLA  60
   61 TGAFGLSYYL AAPGERPNYL LCGLGVAPLS AAYLYLVSLF NHKLAPKCTR DQNDLEKQKD 120
  121 EKLPQHHPEV KDGEAACPFS KMNNAKTLKP ESERSVKCHS YMSLHMSIVT GITIFTFGKC 180
  181 ILDGFKA

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.60
Transmembrane Helix	16	38	0.80
Cytoplasmic	39	45	0.66
Transmembrane Helix	46	71	0.85
Non-Cytoplasmic	72	78	0.65
Transmembrane Helix	79	100	0.88
Cytoplasmic	101	160	0.76
Transmembrane Helix	161	182	0.65
Non-Cytoplasmic	183	187	0.58