YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190406936
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTELDYQGTA EAASTSYSRN QTDLKPFPSA GSASSSIKTT EPVKDHRRRR SSSIISHVEP  60
   61 ETFEDENDQQ LLPNMNATWV DQRGAWIIHV VIIILLKLFY NLFPGVTTEW SWTLTNMTYV 120
  121 IGSYVMFHLI KGTPFDFNGG AYDNLTMWEQ IDDETLYTPS RKFLISVPIA LFLVSTHYAH 180
  181 YDLKLFSWNC FLTTFGAVVP KLPVTHRLRI SIPGITGRAQ IS

Type	Start	End	Confidence
Cytoplasmic	1	84	0.84
Transmembrane Helix	85	103	0.90
Non-Cytoplasmic	104	111	0.63
Transmembrane Helix	112	130	0.70
Cytoplasmic	131	162	0.63
Transmembrane Helix	163	180	0.65
Non-Cytoplasmic	181	184	0.64
Transmembrane Helix	185	204	0.63
Cytoplasmic	205	222	0.75