YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CAX4_YEAST
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSTAAAINP NPNVIPFDDT YILYDSHDFL SFLSAYFSLM PILVLAFYLS WFIITRELEA  60
   61 CIVAFGQLMN EIFNNVIKNI IKQPRPVSFG ASFQNDTIRS GYGMPSAHSQ FMGFCFTYNS 120
  121 LKIYTSWKNL NFLEKCIFSG ALALLSFCVC FSRVYLHYHN LDQVIVGFSV GALTGSLYFF 180
  181 IVGIIRELGL INWFLKLRIV RLFYMTDSYN LAPLTLKENY EAYWKRINQR SFNDKSKRD

Type	Start	End	Confidence
Non-Cytoplasmic	1	31	0.77
Transmembrane Helix	32	54	0.88
Cytoplasmic	55	135	0.81
Transmembrane Helix	136	156	0.96
Non-Cytoplasmic	157	163	0.85
Transmembrane Helix	164	188	0.80
Cytoplasmic	189	239	0.93