YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|151943302
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRLRRFNRK ILSLSSDYTH DGESDQEDVS ILPLDTEEQE ELIQKFETNA HITNKLYINL  60
   61 LSILYLLYGG LLMILVRKSR GYIKLALLAG ANSLICSCIT LRYDIVNDYL LFKKFKLRVS 120
  121 NFSINIINII LLVLMAWISF NHVVEDKKTV LCLQVPMFLF WVAVLVKRWA RNIEDEIADL 180
  181 RCLKYKYKNA

Type	Start	End	Confidence
Cytoplasmic	1	55	0.89
Transmembrane Helix	56	76	0.92
Non-Cytoplasmic	77	82	0.75
Transmembrane Helix	83	103	0.86
Cytoplasmic	104	120	0.82
Transmembrane Helix	121	140	0.93
Non-Cytoplasmic	141	149	0.75
Transmembrane Helix	150	170	0.83
Cytoplasmic	171	190	0.91