YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PEX31
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEINNENLE PTSSTVAEST ESKNKHIRSA LRKRRGKLSA QTYEEDQEAI LSSPLLTSTP  60
   61 KTVSRSLVRL YPYLIVVDNF LSIITWSNDN VSANLLGIFL FTVCVLYFGF ITRYFGHLMI 120
  121 VGIIWVYLLI DKHVQETMAS CPSLDDIIHV MDRVSMKSSA VLSPITILSA QDVRRLLFTI 180
  181 AFLSPVYIFL TVFVLSPNYL MLIGGLYVLT YHSKLIRRMR RYLWKFRVVR LLVFFITGLD 240
  241 LGGPDNNRRL FASVNKKIRS FVWNEVGNTS NTKKTVLFKV ALFENQRRWL GIGWTSTMLS 300
  301 YERASWTDEF LNTSPSPEVF TLPEEQSGMA WEWHDKDWML DLTNDGIIQL PASAAKTKVK 360
  361 PGADEGFIYY DNTWNNPSAT DTYKKYTRRR RWIRTATVTT TYDDEPTVEK ATPNSHALKS 420
  421 EENNRVRKRK VSFSTANEVH IIPSSDSSKL IQISDVSMSP SL

Type	Start	End	Confidence
Cytoplasmic	1	90	0.82
Transmembrane Helix	91	117	0.76
Non-Cytoplasmic	118	185	0.50
Transmembrane Helix	186	211	0.85
Cytoplasmic	212	225	0.81
Transmembrane Helix	226	243	0.87
Non-Cytoplasmic	244	462	0.91